Variant report

Variant	rs12528986
Chromosome Location	chr6:132571889-132571890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10484484	0.81[JPT][hapmap]
rs11154669	0.87[JPT][hapmap]
rs11154670	0.87[JPT][hapmap]
rs11755929	0.87[JPT][hapmap]
rs1406930	0.87[JPT][hapmap]
rs1406931	0.87[JPT][hapmap]
rs17061084	0.82[JPT][hapmap]
rs17061091	0.87[JPT][hapmap]
rs4502948	0.87[JPT][hapmap]
rs58485094	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6941654	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132567600-132573200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:132568800-132572400	Weak transcription	NHEK	skin
3	chr6:132569600-132581600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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