Variant report

Variant	rs10484859
Chromosome Location	chr6:56464208-56464209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16888045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16888053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888061	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16888070	0.89[ASN][1000 genomes]
rs2207678	0.89[ASN][1000 genomes]
rs2230863	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41271876	0.89[ASN][1000 genomes]
rs41271878	0.89[ASN][1000 genomes]
rs45553042	0.89[ASN][1000 genomes]
rs45564536	1.00[ASN][1000 genomes]
rs57350484	0.89[ASN][1000 genomes]
rs6459165	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6941626	0.89[ASN][1000 genomes]
rs7760099	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7769543	1.00[AMR][1000 genomes]
rs7775134	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56408200-56496000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:56417000-56516400	Weak transcription	Pancreas	Pancrea
3	chr6:56417200-56481400	Weak transcription	Esophagus	oesophagus
4	chr6:56432800-56513600	Weak transcription	Small Intestine	intestine
5	chr6:56436400-56464800	Weak transcription	Fetal Brain Male	brain
6	chr6:56440800-56465800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:56441000-56524800	Weak transcription	Colonic Mucosa	Colon
8	chr6:56441600-56465600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:56451800-56514200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:56452200-56514600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:56452800-56469200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:56452800-56470000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:56452800-56476000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:56452800-56489400	Strong transcription	Liver	Liver
15	chr6:56453000-56468800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:56453000-56469000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:56453000-56469000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:56453000-56469200	Strong transcription	Fetal Intestine Large	intestine
19	chr6:56453000-56469800	Strong transcription	NH-A	brain
20	chr6:56453000-56492000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:56453000-56502200	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr6:56453000-56506800	Strong transcription	HSMM	muscle
23	chr6:56453200-56470000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:56453400-56469200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:56453400-56476200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:56453800-56469000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:56453800-56470800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:56454200-56467400	Strong transcription	HMEC	breast
29	chr6:56455400-56476000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:56455400-56486200	Strong transcription	HSMMtube	muscle
31	chr6:56455800-56464600	Weak transcription	Gastric	stomach
32	chr6:56455800-56465800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr6:56457000-56468000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:56457000-56468000	Weak transcription	Psoas Muscle	Psoas
35	chr6:56457200-56473200	Weak transcription	Aorta	Aorta
36	chr6:56457200-56478200	Weak transcription	Fetal Heart	heart
37	chr6:56457200-56501200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:56457400-56465200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:56458800-56488200	Weak transcription	HepG2	liver
40	chr6:56459000-56496200	Weak transcription	Fetal Kidney	kidney
41	chr6:56459000-56502400	Strong transcription	Osteobl	bone
42	chr6:56459000-56521000	Weak transcription	Spleen	Spleen
43	chr6:56459200-56465600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:56459200-56468800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:56459200-56473000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:56459800-56479200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:56460000-56464800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr6:56460000-56469400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:56460000-56471600	Weak transcription	Ovary	ovary
50	chr6:56460400-56464400	Weak transcription	Duodenum Mucosa	Duodenum

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