Variant report

Variant	rs45564536
Chromosome Location	chr6:56471650-56471651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:56464553..56466952-chr6:56469222..56471761,3	MCF-7	breast:
2	chr6:56469736..56472116-chr6:56473796..56475324,2	MCF-7	breast:
3	chr6:56465447..56467405-chr6:56469349..56471990,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10484859	1.00[ASN][1000 genomes]
rs16888045	0.87[ASN][1000 genomes]
rs16888053	1.00[ASN][1000 genomes]
rs16888061	1.00[ASN][1000 genomes]
rs16888070	0.89[ASN][1000 genomes]
rs2207678	0.89[ASN][1000 genomes]
rs2230863	1.00[ASN][1000 genomes]
rs41271876	0.89[ASN][1000 genomes]
rs41271878	0.89[ASN][1000 genomes]
rs45553042	0.89[ASN][1000 genomes]
rs57350484	0.89[ASN][1000 genomes]
rs6459165	1.00[ASN][1000 genomes]
rs6941626	0.89[ASN][1000 genomes]
rs7760099	0.87[ASN][1000 genomes]
rs7775134	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv820249	chr6:56470837-56472006	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56408200-56496000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:56417000-56516400	Weak transcription	Pancreas	Pancrea
3	chr6:56417200-56481400	Weak transcription	Esophagus	oesophagus
4	chr6:56432800-56513600	Weak transcription	Small Intestine	intestine
5	chr6:56441000-56524800	Weak transcription	Colonic Mucosa	Colon
6	chr6:56451800-56514200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:56452200-56514600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:56452800-56476000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:56452800-56489400	Strong transcription	Liver	Liver
10	chr6:56453000-56492000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:56453000-56502200	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr6:56453000-56506800	Strong transcription	HSMM	muscle
13	chr6:56453400-56476200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:56455400-56476000	Strong transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:56455400-56486200	Strong transcription	HSMMtube	muscle
16	chr6:56457200-56473200	Weak transcription	Aorta	Aorta
17	chr6:56457200-56478200	Weak transcription	Fetal Heart	heart
18	chr6:56457200-56501200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:56458800-56488200	Weak transcription	HepG2	liver
20	chr6:56459000-56496200	Weak transcription	Fetal Kidney	kidney
21	chr6:56459000-56502400	Strong transcription	Osteobl	bone
22	chr6:56459000-56521000	Weak transcription	Spleen	Spleen
23	chr6:56459200-56473000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:56459800-56479200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr6:56460600-56496000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr6:56460600-56513600	Weak transcription	Stomach Mucosa	stomach
27	chr6:56460800-56476800	Strong transcription	NHDF-Ad	bronchial
28	chr6:56460800-56489000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr6:56462000-56472600	Weak transcription	Fetal Intestine Small	intestine
30	chr6:56462000-56473200	Weak transcription	Fetal Stomach	stomach
31	chr6:56462000-56476600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:56462200-56473400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:56463000-56473200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:56465000-56473200	Weak transcription	Fetal Muscle Leg	muscle
35	chr6:56466000-56472600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:56466200-56473800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:56466400-56472600	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr6:56466400-56473200	Weak transcription	Fetal Brain Female	brain
39	chr6:56466400-56473400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:56466600-56472600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr6:56466600-56472600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:56466600-56473000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr6:56466600-56473400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:56466600-56480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:56467200-56471800	Weak transcription	A549	lung
46	chr6:56467200-56472000	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:56467200-56480200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr6:56467400-56472200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:56467400-56473200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:56467400-56473200	Weak transcription	NHEK	skin

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