Variant report

Variant	rs10484946
Chromosome Location	chr6:79856630-79856631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10943611	0.85[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap]
rs1283320	0.85[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];1.00[YRI][hapmap]
rs1577794	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933238	0.85[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs3812161	0.85[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs56998714	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73466226	0.87[AFR][1000 genomes]
rs73466238	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73466246	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73466254	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73466274	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73466286	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9968921	0.85[CEU][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830706	chr6:79825910-79994878	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10484946	IRAK1BP1	cis	lymphoblastoid	seeQTL
rs10484946	IRAK1BP1	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79853400-79858600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:79853400-79859600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:79856200-79858600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:79856200-79859400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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