Variant report

Variant	rs73466238
Chromosome Location	chr6:79823868-79823869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79787781..79789616-chr6:79822786..79824625,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146247	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10484946	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10943611	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12110918	0.86[ASN][1000 genomes]
rs1283320	0.82[ASN][1000 genomes]
rs1577794	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1933238	0.82[ASN][1000 genomes]
rs2089416	0.82[ASN][1000 genomes]
rs2135768	0.82[ASN][1000 genomes]
rs3812161	0.86[ASN][1000 genomes]
rs55696019	0.86[ASN][1000 genomes]
rs56769571	0.82[ASN][1000 genomes]
rs56998714	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60527133	0.82[ASN][1000 genomes]
rs66509445	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs66537043	0.82[ASN][1000 genomes]
rs66587298	0.86[ASN][1000 genomes]
rs67073459	0.82[ASN][1000 genomes]
rs67143444	0.82[ASN][1000 genomes]
rs67192540	0.82[ASN][1000 genomes]
rs67221234	0.82[ASN][1000 genomes]
rs67241845	0.86[ASN][1000 genomes]
rs67354417	0.84[ASN][1000 genomes]
rs67628258	0.82[ASN][1000 genomes]
rs67763383	0.86[ASN][1000 genomes]
rs67799776	0.82[ASN][1000 genomes]
rs67815356	0.80[ASN][1000 genomes]
rs67890480	0.84[ASN][1000 genomes]
rs67903175	0.82[ASN][1000 genomes]
rs68067309	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs68099353	0.82[ASN][1000 genomes]
rs72902902	0.87[AFR][1000 genomes]
rs73464131	0.82[ASN][1000 genomes]
rs73464167	0.82[ASN][1000 genomes]
rs73466226	0.98[ASN][1000 genomes]
rs73466246	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73466254	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73466274	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73466286	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7767182	0.82[ASN][1000 genomes]
rs9359358	0.82[ASN][1000 genomes]
rs9361468	0.82[ASN][1000 genomes]
rs9968921	0.86[ASN][1000 genomes]
rs9969106	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79823800-79824000	Enhancers	H9 Cell Line	embryonic stem cell
2	chr6:79823800-79824000	Enhancers	HUES6 Cell Line	embryonic stem cell

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