Variant report

Variant	rs67890480
Chromosome Location	chr6:79761886-79761887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:79757003..79760013-chr6:79760325..79763644,4	K562	blood:
2	chr6:79753793..79756103-chr6:79759562..79763540,4	K562	blood:
3	chr6:79760341..79764703-chr6:79769573..79773396,4	MCF-7	breast:
4	chr6:79757654..79762707-chr6:79762801..79766405,4	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1021988	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10943611	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11547228	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12110918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1283320	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1933238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1963080	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2089416	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2135768	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2135771	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2135772	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2321894	0.84[EUR][1000 genomes]
rs3812161	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4327648	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55696019	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56769571	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60527133	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62424927	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6454089	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66509445	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66537043	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66587298	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67073459	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67143444	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67192540	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67221234	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67241845	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67354417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67628258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67763383	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67799776	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67815356	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67903175	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68067309	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs68099353	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6936109	0.88[EUR][1000 genomes]
rs72902902	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73464131	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73464167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73466226	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73466238	0.84[ASN][1000 genomes]
rs7767182	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9341755	0.87[EUR][1000 genomes]
rs9343846	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9350789	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352673	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9352674	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359355	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359358	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9361468	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9968921	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9969106	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687600-79775000	Strong transcription	Dnd41	blood
2	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
5	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
7	chr6:79717200-79765600	Weak transcription	Colon Smooth Muscle	Colon
8	chr6:79724600-79765200	Weak transcription	Stomach Mucosa	stomach
9	chr6:79726000-79765800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:79726600-79766200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:79727000-79767800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:79730000-79786600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:79730600-79776600	Weak transcription	Aorta	Aorta
14	chr6:79732200-79774600	Weak transcription	Gastric	stomach
15	chr6:79733000-79765800	Weak transcription	Lung	lung
16	chr6:79733600-79765200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:79734000-79768000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:79736000-79773600	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:79736200-79762000	Weak transcription	Brain Anterior Caudate	brain
20	chr6:79739000-79780000	Weak transcription	NHLF	lung
21	chr6:79739400-79769400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:79742000-79785400	Weak transcription	HSMMtube	muscle
23	chr6:79742400-79765200	Weak transcription	Small Intestine	intestine
24	chr6:79742600-79773800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:79743400-79769600	Weak transcription	NHEK	skin
26	chr6:79748200-79774000	Weak transcription	Fetal Heart	heart
27	chr6:79748200-79774400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:79748400-79762000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:79749200-79765600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:79751200-79765800	Weak transcription	Left Ventricle	heart
31	chr6:79751600-79774600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:79751800-79762400	Weak transcription	Hela-S3	cervix
33	chr6:79751800-79765200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:79752800-79762000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:79752800-79762000	Weak transcription	NHDF-Ad	bronchial
36	chr6:79755000-79785400	Weak transcription	Colonic Mucosa	Colon
37	chr6:79755600-79771000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr6:79756200-79762000	Weak transcription	Primary T cells from cord blood	blood
39	chr6:79756600-79766200	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:79756600-79775000	Weak transcription	Pancreas	Pancrea
41	chr6:79756800-79762000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:79757400-79765600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:79757400-79766000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:79757600-79767600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:79758200-79764200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:79758400-79763600	Strong transcription	Fetal Intestine Large	intestine
47	chr6:79758400-79764000	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:79758400-79770800	Strong transcription	Fetal Thymus	thymus
49	chr6:79758600-79762000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:79758600-79763600	Strong transcription	Adipose Nuclei	Adipose

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