Variant report

Variant	rs2321894
Chromosome Location	chr6:79564429-79564430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79558999..79561726-chr6:79563730..79565524,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1021988	0.96[EUR][1000 genomes]
rs10943611	0.89[EUR][1000 genomes]
rs11547228	0.93[EUR][1000 genomes]
rs12110918	0.85[EUR][1000 genomes]
rs1283320	0.92[EUR][1000 genomes]
rs1507148	1.00[EUR][1000 genomes]
rs1933238	0.89[EUR][1000 genomes]
rs1963080	0.85[EUR][1000 genomes]
rs2013420	0.87[EUR][1000 genomes]
rs2089416	0.95[EUR][1000 genomes]
rs2135768	0.91[EUR][1000 genomes]
rs2135771	0.96[EUR][1000 genomes]
rs2135772	0.96[EUR][1000 genomes]
rs4327648	0.96[EUR][1000 genomes]
rs56769571	0.87[EUR][1000 genomes]
rs60527133	0.92[EUR][1000 genomes]
rs62424927	0.92[EUR][1000 genomes]
rs6454089	0.96[EUR][1000 genomes]
rs66509445	0.89[EUR][1000 genomes]
rs66537043	0.85[EUR][1000 genomes]
rs66587298	0.85[EUR][1000 genomes]
rs67073459	0.89[EUR][1000 genomes]
rs67143444	0.85[EUR][1000 genomes]
rs67192540	0.85[EUR][1000 genomes]
rs67221234	0.89[EUR][1000 genomes]
rs67241845	0.85[EUR][1000 genomes]
rs67354417	0.85[EUR][1000 genomes]
rs67628258	0.87[EUR][1000 genomes]
rs67799776	0.92[EUR][1000 genomes]
rs67815356	0.89[EUR][1000 genomes]
rs67890480	0.84[EUR][1000 genomes]
rs67903175	0.85[EUR][1000 genomes]
rs68067309	0.89[EUR][1000 genomes]
rs68099353	0.87[EUR][1000 genomes]
rs6936109	0.96[EUR][1000 genomes]
rs72902902	0.87[EUR][1000 genomes]
rs73464131	0.89[EUR][1000 genomes]
rs73464167	0.85[EUR][1000 genomes]
rs7767182	0.95[EUR][1000 genomes]
rs906319	0.88[EUR][1000 genomes]
rs906320	0.88[EUR][1000 genomes]
rs9341755	0.95[EUR][1000 genomes]
rs9343838	0.88[EUR][1000 genomes]
rs9343846	0.96[EUR][1000 genomes]
rs9350789	0.96[EUR][1000 genomes]
rs9352673	0.96[EUR][1000 genomes]
rs9352674	0.96[EUR][1000 genomes]
rs9359355	0.95[EUR][1000 genomes]
rs9359358	0.95[EUR][1000 genomes]
rs9361468	0.95[EUR][1000 genomes]
rs9969106	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2321894	IRAK1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79555800-79576400	Weak transcription	Left Ventricle	heart
2	chr6:79557800-79571200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:79562800-79568600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:79563000-79576200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:79563600-79565400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:79564000-79564600	Active TSS	Brain Hippocampus Middle	brain
7	chr6:79564000-79564800	Active TSS	Brain Cingulate Gyrus	brain
8	chr6:79564200-79564600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:79564200-79564600	Active TSS	Brain Angular Gyrus	brain
10	chr6:79564200-79564800	Active TSS	Brain Anterior Caudate	brain
11	chr6:79564200-79564800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr6:79564200-79564800	Active TSS	Brain Substantia Nigra	brain
13	chr6:79564200-79565000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:79564200-79576200	Weak transcription	Right Ventricle	heart
15	chr6:79564400-79564600	Weak transcription	Ovary	ovary

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