Variant report

Variant	rs2013420
Chromosome Location	chr6:79541215-79541216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1021988	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10943611	0.84[EUR][1000 genomes]
rs11547228	0.80[EUR][1000 genomes]
rs1283320	0.87[EUR][1000 genomes]
rs1507148	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1933238	0.84[EUR][1000 genomes]
rs1963080	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2089416	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2135768	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2135771	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2135772	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2321894	0.87[EUR][1000 genomes]
rs4327648	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4640849	0.81[EUR][1000 genomes]
rs60527133	0.87[EUR][1000 genomes]
rs61517344	0.80[EUR][1000 genomes]
rs62424927	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6454089	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66509445	0.84[EUR][1000 genomes]
rs67073459	0.84[EUR][1000 genomes]
rs67221234	0.84[EUR][1000 genomes]
rs67628258	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67799776	0.87[EUR][1000 genomes]
rs67815356	0.84[EUR][1000 genomes]
rs67903175	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68067309	0.84[EUR][1000 genomes]
rs68099353	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6936109	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72902902	0.82[EUR][1000 genomes]
rs73464131	0.84[EUR][1000 genomes]
rs7767182	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs906319	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs906320	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9341755	0.89[EUR][1000 genomes]
rs9343838	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9343846	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9350789	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9352673	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9352674	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9359355	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9359358	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9361468	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2013420	IRAK1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79539600-79542000	Enhancers	Duodenum Mucosa	Duodenum
2	chr6:79540200-79541400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:79540400-79542000	Enhancers	Fetal Intestine Large	intestine
4	chr6:79540600-79541600	Enhancers	Ovary	ovary
5	chr6:79540800-79541600	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr6:79541000-79541600	Enhancers	Pancreas	Pancrea
7	chr6:79541000-79542800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:79541200-79541400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:79541200-79542000	Enhancers	Brain Angular Gyrus	brain
10	chr6:79541200-79542000	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:79541200-79542000	Enhancers	Brain Hippocampus Middle	brain
12	chr6:79541200-79542000	Enhancers	Right Atrium	heart
13	chr6:79541200-79542400	Enhancers	Fetal Intestine Small	intestine

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