Variant report

Variant	rs1507148
Chromosome Location	chr6:79554391-79554392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1021988	0.96[EUR][1000 genomes]
rs10943611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs11547228	1.00[ASW][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1283320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.92[EUR][1000 genomes]
rs1933238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1963080	0.85[EUR][1000 genomes]
rs2013420	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2089416	0.95[EUR][1000 genomes]
rs2135768	0.91[EUR][1000 genomes]
rs2135771	0.96[EUR][1000 genomes]
rs2135772	0.96[EUR][1000 genomes]
rs2321894	1.00[EUR][1000 genomes]
rs4327648	0.96[EUR][1000 genomes]
rs4640849	0.87[AMR][1000 genomes]
rs56769571	0.87[EUR][1000 genomes]
rs60527133	0.92[EUR][1000 genomes]
rs62424927	0.92[EUR][1000 genomes]
rs6454089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs66509445	0.89[EUR][1000 genomes]
rs66537043	0.85[EUR][1000 genomes]
rs67073459	0.89[EUR][1000 genomes]
rs67143444	0.85[EUR][1000 genomes]
rs67221234	0.89[EUR][1000 genomes]
rs67628258	0.87[EUR][1000 genomes]
rs67799776	0.92[EUR][1000 genomes]
rs67815356	0.89[EUR][1000 genomes]
rs67903175	0.85[EUR][1000 genomes]
rs68067309	0.89[EUR][1000 genomes]
rs68099353	0.87[EUR][1000 genomes]
rs6936109	0.96[EUR][1000 genomes]
rs72902902	0.87[EUR][1000 genomes]
rs73464131	0.89[EUR][1000 genomes]
rs73464167	0.85[EUR][1000 genomes]
rs7767182	0.95[EUR][1000 genomes]
rs906319	0.88[EUR][1000 genomes]
rs906320	0.88[EUR][1000 genomes]
rs9341755	0.95[EUR][1000 genomes]
rs9343838	0.88[EUR][1000 genomes]
rs9343846	0.96[EUR][1000 genomes]
rs9350789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.96[EUR][1000 genomes]
rs9352673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs9352674	0.96[EUR][1000 genomes]
rs9359355	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs9359358	0.95[EUR][1000 genomes]
rs9361468	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1839807	chr6:79532610-79606615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1507148	IRAK1BP1	cis	lymphoblastoid	seeQTL
rs1507148	IRAK1BP1	cis	multi-tissue	Pritchard
rs1507148	IRAK1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79553400-79558200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:79553600-79564200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:79553800-79562400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:79554200-79564200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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