Variant report

Variant	rs10486148
Chromosome Location	chr7:11644641-11644642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10486145	0.93[CHB][hapmap]
rs6977236	0.89[ASN][1000 genomes]
rs72506082	0.99[ASN][1000 genomes]
rs73676040	0.80[ASN][1000 genomes]
rs73676041	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11630400-11644800	Weak transcription	Fetal Lung	lung
2	chr7:11632000-11645000	Weak transcription	Left Ventricle	heart
3	chr7:11643800-11644800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:11643800-11644800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:11643800-11646000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:11643800-11646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr7:11644200-11646000	Enhancers	A549	lung
8	chr7:11644400-11644800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:11644400-11644800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:11644400-11645400	Weak transcription	Brain Angular Gyrus	brain
11	chr7:11644400-11645600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:11644400-11645800	Enhancers	Fetal Muscle Leg	muscle
13	chr7:11644400-11645800	Enhancers	Ovary	ovary
14	chr7:11644400-11646200	Enhancers	Adipose Nuclei	Adipose
15	chr7:11644600-11644800	Enhancers	Brain Substantia Nigra	brain
16	chr7:11644600-11645200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:11644600-11645400	Weak transcription	Colon Smooth Muscle	Colon
18	chr7:11644600-11645600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:11644600-11645800	Weak transcription	Fetal Kidney	kidney
20	chr7:11644600-11647400	Weak transcription	Fetal Heart	heart
21	chr7:11644600-11648800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:11644600-11649000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:11644600-11649000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:11644600-11652800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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