Variant report

Variant	rs6977236
Chromosome Location	chr7:11648252-11648253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10236115	1.00[EUR][1000 genomes]
rs10486146	1.00[EUR][1000 genomes]
rs10486148	0.89[ASN][1000 genomes]
rs16877006	1.00[EUR][1000 genomes]
rs17164942	1.00[EUR][1000 genomes]
rs17164943	1.00[EUR][1000 genomes]
rs17164945	1.00[EUR][1000 genomes]
rs17164946	1.00[EUR][1000 genomes]
rs17164958	1.00[EUR][1000 genomes]
rs17164960	1.00[EUR][1000 genomes]
rs17519435	1.00[EUR][1000 genomes]
rs17519442	1.00[EUR][1000 genomes]
rs2074600	1.00[EUR][1000 genomes]
rs4530931	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6460830	0.83[ASN][1000 genomes]
rs6950617	1.00[EUR][1000 genomes]
rs6953767	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6980266	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6980366	0.83[ASN][1000 genomes]
rs6980392	0.83[ASN][1000 genomes]
rs72506082	0.90[ASN][1000 genomes]
rs73676040	0.89[ASN][1000 genomes]
rs73676041	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11644600-11648800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:11644600-11649000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:11644600-11649000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:11644600-11652800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:11644800-11649200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:11644800-11653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:11645800-11649800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr7:11646000-11648600	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:11646000-11649000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:11646000-11649800	Weak transcription	A549	lung
11	chr7:11646000-11654200	Weak transcription	Fetal Lung	lung
12	chr7:11647200-11649400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr7:11647600-11648400	Weak transcription	Adipose Nuclei	Adipose
14	chr7:11647800-11648800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:11647800-11652800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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