Variant report

Variant	rs10486784
Chromosome Location	chr7:15971771-15971772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11769915	0.83[EUR][1000 genomes]
rs11980731	0.83[AMR][1000 genomes]
rs12668135	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12670083	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16878646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs38256	0.84[AMR][1000 genomes]
rs38257	0.83[AMR][1000 genomes]
rs55823945	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56863864	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv520205	chr7:15964238-15975614	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10486784	SVEP1	trans	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15970400-15973600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:15970800-15972200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr7:15971200-15971800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:15971200-15972600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:15971400-15973200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr7:15971600-15971800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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