Variant report

Variant	rs11769915
Chromosome Location	chr7:16025206-16025207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10486784	0.83[EUR][1000 genomes]
rs12668135	0.86[EUR][1000 genomes]
rs12670083	0.83[EUR][1000 genomes]
rs16878646	0.80[EUR][1000 genomes]
rs55823945	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024621	chr7:16009368-16030199	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1030846	chr7:16015341-16028125	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv34337	chr7:16015860-16027889	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv2757213	chr7:16015863-16027889	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv2759513	chr7:16015863-16027889	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv2761123	chr7:16024878-16025508	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16024400-16026600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:16024400-16027000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr7:16024600-16025800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:16024600-16026000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:16024600-16027000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:16024800-16025600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:16024800-16027000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:16024800-16027200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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