Variant report

Variant	rs10487836
Chromosome Location	chr7:105488330-105488331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105459523..105462171-chr7:105487556..105490003,2	K562	blood:

Variant related genes	Relation type
ENSG00000226624	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10258171	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10272675	0.84[GIH][hapmap];0.81[TSI][hapmap]
rs11979996	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4730108	1.00[CEU][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62482787	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62482788	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6965296	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs740308	1.00[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs886796	1.00[CHD][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
2	chr7:105472400-105489800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:105473000-105494400	Weak transcription	Fetal Lung	lung
4	chr7:105473200-105490000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:105479400-105490000	Weak transcription	NHDF-Ad	bronchial
6	chr7:105479400-105494400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:105479600-105489600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:105479600-105489600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:105479600-105489800	Weak transcription	HSMM	muscle
10	chr7:105479600-105494400	Weak transcription	Fetal Kidney	kidney
11	chr7:105479600-105506200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:105479800-105489800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:105480000-105489000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:105480000-105489200	Weak transcription	Gastric	stomach
15	chr7:105480000-105489200	Weak transcription	Left Ventricle	heart
16	chr7:105480000-105489200	Weak transcription	Right Ventricle	heart
17	chr7:105480000-105489600	Weak transcription	A549	lung
18	chr7:105480000-105490000	Weak transcription	Stomach Mucosa	stomach
19	chr7:105480000-105492800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:105480000-105494400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr7:105480000-105494400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:105480000-105494400	Weak transcription	Brain Substantia Nigra	brain
23	chr7:105480000-105494400	Weak transcription	Osteobl	bone
24	chr7:105480000-105494800	Weak transcription	Brain Anterior Caudate	brain
25	chr7:105480000-105515600	Weak transcription	Ovary	ovary
26	chr7:105480600-105489200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:105480600-105489200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:105480600-105494200	Weak transcription	Brain Germinal Matrix	brain
29	chr7:105481000-105494400	Weak transcription	Fetal Brain Female	brain
30	chr7:105481200-105489200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:105481200-105489200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr7:105481200-105489200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:105481400-105488800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:105481400-105489000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr7:105481800-105489200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:105481800-105489200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:105482200-105489200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:105482200-105506400	Weak transcription	Psoas Muscle	Psoas
39	chr7:105482400-105494200	Weak transcription	Placenta	Placenta
40	chr7:105482600-105489200	Weak transcription	Spleen	Spleen
41	chr7:105482600-105489600	Weak transcription	Esophagus	oesophagus
42	chr7:105482600-105490000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr7:105482600-105490600	Weak transcription	Colon Smooth Muscle	Colon
44	chr7:105482600-105492000	Weak transcription	NHLF	lung
45	chr7:105483000-105489800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:105483000-105494600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:105483000-105506400	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr7:105483400-105489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr7:105483400-105489600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr7:105484200-105489200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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