Variant report

Variant	rs11979996
Chromosome Location	chr7:105454740-105454741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105449060..105451354-chr7:105453657..105456197,2	K562	blood:
2	chr7:105446426..105449323-chr7:105454284..105457233,3	MCF-7	breast:
3	chr7:105427810..105430751-chr7:105453985..105456543,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10258171	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10487836	1.00[CEU][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4730108	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62482787	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62482788	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6965296	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs740308	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105441200-105457200	Weak transcription	Fetal Lung	lung
3	chr7:105446400-105471200	Weak transcription	Lung	lung
4	chr7:105446800-105456000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:105446800-105457200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:105446800-105470000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:105446800-105470200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:105446800-105471200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:105447000-105470000	Weak transcription	Ovary	ovary
10	chr7:105447200-105457000	Weak transcription	Gastric	stomach
11	chr7:105447200-105470200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:105447600-105455800	Weak transcription	Brain Hippocampus Middle	brain
13	chr7:105447600-105470000	Weak transcription	NH-A	brain
14	chr7:105447800-105457000	Weak transcription	Spleen	Spleen
15	chr7:105447800-105470600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:105448000-105455800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:105448000-105460000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:105448200-105460800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:105448600-105465000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr7:105448800-105463200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:105448800-105470400	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
23	chr7:105449600-105458000	Weak transcription	Fetal Thymus	thymus
24	chr7:105450200-105456000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr7:105450200-105456400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:105450200-105456400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:105450200-105466400	Weak transcription	NHLF	lung
28	chr7:105450400-105455600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:105450400-105457400	Weak transcription	Primary T cells from cord blood	blood
30	chr7:105450400-105460000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:105450400-105470200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:105450800-105457000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:105450800-105459000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:105450800-105463200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr7:105450800-105470200	Weak transcription	NHEK	skin
36	chr7:105451200-105462600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr7:105451400-105455600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr7:105451600-105462000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr7:105452200-105456000	Weak transcription	Fetal Intestine Small	intestine
40	chr7:105452400-105455400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:105452400-105457800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:105452400-105464600	Weak transcription	Fetal Intestine Large	intestine
43	chr7:105452400-105467400	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr7:105452400-105471200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:105452600-105460000	Weak transcription	Fetal Stomach	stomach
46	chr7:105452600-105470800	Weak transcription	Small Intestine	intestine
47	chr7:105452600-105471200	Weak transcription	Right Ventricle	heart
48	chr7:105452800-105465800	Weak transcription	Liver	Liver
49	chr7:105452800-105470400	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:105453200-105455200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links