Variant report

Variant	rs10488303
Chromosome Location	chr3:118664955-118664956
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11923277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12491204	0.82[CHB][hapmap]
rs16829203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16829206	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17491031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2866319	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41330049	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41414745	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41523948	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56314531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6785161	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795523	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325355	1.00[AFR][1000 genomes]
rs9817851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9836742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9860173	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861721	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118658000-118668400	Weak transcription	A549	lung
2	chr3:118661000-118665600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:118661200-118665600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr3:118661600-118666600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:118661800-118665600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:118661800-118667000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr3:118662000-118665400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr3:118662000-118666600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:118662000-118666800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr3:118662000-118666800	Weak transcription	Fetal Lung	lung
11	chr3:118662000-118667000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr3:118662000-118667200	Weak transcription	Brain Angular Gyrus	brain
13	chr3:118662000-118668000	Enhancers	Primary T cells from cord blood	blood
14	chr3:118662000-118679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:118662000-118679800	Weak transcription	Ovary	ovary
16	chr3:118662200-118666800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:118662600-118665400	Enhancers	Fetal Heart	heart
18	chr3:118662800-118666400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:118662800-118666600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr3:118662800-118666600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr3:118662800-118672000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:118662800-118672400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr3:118663800-118665000	Weak transcription	Brain Substantia Nigra	brain
24	chr3:118664200-118665600	Enhancers	Brain Cingulate Gyrus	brain
25	chr3:118664400-118665000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:118664400-118665600	Enhancers	K562	blood
27	chr3:118664400-118666600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:118664400-118676400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:118664600-118665600	Weak transcription	Brain Anterior Caudate	brain
30	chr3:118664600-118666800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:118664600-118667200	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:118664800-118665200	Weak transcription	Brain Germinal Matrix	brain
33	chr3:118664800-118667400	Enhancers	Placenta Amnion	Placenta Amnion

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