Variant report

Variant	rs9817851
Chromosome Location	chr3:118711777-118711778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10488303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11923277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12491204	0.82[CHB][hapmap]
rs1369579	0.83[ASN][1000 genomes]
rs16829203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16829206	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs16829250	0.83[ASN][1000 genomes]
rs17491031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2866319	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41330049	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs41414745	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41523948	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56314531	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6785161	0.80[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6795523	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6795721	0.83[YRI][hapmap]
rs6796798	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs72968654	0.92[AFR][1000 genomes]
rs7624134	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7625109	0.81[AFR][1000 genomes]
rs9289118	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9814712	0.85[AFR][1000 genomes]
rs9826100	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs9835052	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9836742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840552	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9841148	0.88[AFR][1000 genomes]
rs9848498	0.85[AFR][1000 genomes]
rs9854365	0.81[AFR][1000 genomes]
rs9860173	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9861721	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877369	chr3:118681771-118824418	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2756586	chr3:118688611-118863998	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv877370	chr3:118711777-118799682	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv877371	chr3:118711777-118824418	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118707600-118714800	Weak transcription	Pancreas	Pancrea
2	chr3:118709600-118712000	Enhancers	Brain Germinal Matrix	brain
3	chr3:118710600-118713000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:118711000-118713600	Enhancers	Brain Hippocampus Middle	brain
5	chr3:118711200-118712000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:118711200-118713800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:118711200-118714400	Enhancers	Brain Angular Gyrus	brain
8	chr3:118711200-118714400	Enhancers	Brain Anterior Caudate	brain
9	chr3:118711200-118715400	Enhancers	Brain Cingulate Gyrus	brain
10	chr3:118711400-118711800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:118711400-118711800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:118711400-118712000	Enhancers	Ovary	ovary
13	chr3:118711400-118712600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:118711400-118714200	Enhancers	Brain Substantia Nigra	brain
15	chr3:118711600-118716000	Weak transcription	Brain Inferior Temporal Lobe	brain

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