Variant report

Variant	rs6796798
Chromosome Location	chr3:118676683-118676684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118675897..118678259-chr3:118679117..118681449,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs16829179	0.84[MKK][hapmap]
rs28392691	1.00[AMR][1000 genomes]
rs58420381	1.00[AMR][1000 genomes]
rs6768020	1.00[AMR][1000 genomes]
rs6772441	0.84[MKK][hapmap]
rs6795721	0.80[LWK][hapmap];0.95[MKK][hapmap];0.83[YRI][hapmap]
rs6807838	0.84[MKK][hapmap]
rs72966899	1.00[AMR][1000 genomes]
rs72968606	1.00[AMR][1000 genomes]
rs72968612	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968632	1.00[AMR][1000 genomes]
rs72968654	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72970438	1.00[AMR][1000 genomes]
rs72970470	1.00[AMR][1000 genomes]
rs72970472	1.00[AMR][1000 genomes]
rs7623832	1.00[AMR][1000 genomes]
rs7624134	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7625109	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9289118	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9814712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9817851	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9826100	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9827711	1.00[AMR][1000 genomes]
rs9835052	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9840552	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9841148	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847137	1.00[AMR][1000 genomes]
rs9848498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9854365	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857367	1.00[AMR][1000 genomes]
rs9859319	1.00[ASW][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes]
rs9862313	1.00[AMR][1000 genomes]
rs9862556	1.00[AMR][1000 genomes]
rs9876041	1.00[AMR][1000 genomes]
rs9882006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118662000-118679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:118662000-118679800	Weak transcription	Ovary	ovary
3	chr3:118666200-118677800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:118669200-118677600	Weak transcription	Brain Angular Gyrus	brain
5	chr3:118672800-118677000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:118673000-118676800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:118673000-118676800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:118673000-118677200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:118673200-118677200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr3:118675400-118677200	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr3:118675400-118677200	Enhancers	Brain Hippocampus Middle	brain
12	chr3:118675400-118680800	Enhancers	Brain Anterior Caudate	brain
13	chr3:118675600-118676800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:118675600-118677200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr3:118675600-118684800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:118676000-118677800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:118676000-118678000	Enhancers	Primary T cells from cord blood	blood
18	chr3:118676200-118676800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr3:118676200-118677000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr3:118676200-118677200	Weak transcription	Brain Substantia Nigra	brain
21	chr3:118676400-118676800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:118676400-118677000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr3:118676600-118676800	Enhancers	Brain Cingulate Gyrus	brain
24	chr3:118676600-118678200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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