Variant report

Variant	rs6768020
Chromosome Location	chr3:118599440-118599441
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs28392691	1.00[AMR][1000 genomes]
rs58420381	1.00[AMR][1000 genomes]
rs6796798	1.00[AMR][1000 genomes]
rs72966899	1.00[AMR][1000 genomes]
rs72968606	1.00[AMR][1000 genomes]
rs72968612	1.00[AMR][1000 genomes]
rs72968632	1.00[AMR][1000 genomes]
rs72968654	1.00[AMR][1000 genomes]
rs72970438	1.00[AMR][1000 genomes]
rs72970470	1.00[AMR][1000 genomes]
rs72970472	1.00[AMR][1000 genomes]
rs7623832	1.00[AMR][1000 genomes]
rs7624134	1.00[AMR][1000 genomes]
rs7625109	1.00[AMR][1000 genomes]
rs9289118	1.00[AMR][1000 genomes]
rs9814712	1.00[AMR][1000 genomes]
rs9826100	1.00[AMR][1000 genomes]
rs9827711	1.00[AMR][1000 genomes]
rs9835052	1.00[AMR][1000 genomes]
rs9840552	1.00[AMR][1000 genomes]
rs9841148	1.00[AMR][1000 genomes]
rs9847137	1.00[AMR][1000 genomes]
rs9848498	1.00[AMR][1000 genomes]
rs9854365	1.00[AMR][1000 genomes]
rs9857367	1.00[AMR][1000 genomes]
rs9859319	1.00[AMR][1000 genomes]
rs9862313	1.00[AMR][1000 genomes]
rs9862556	1.00[AMR][1000 genomes]
rs9876041	1.00[AMR][1000 genomes]
rs9882006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118598800-118599600	Enhancers	Fetal Brain Female	brain
2	chr3:118599000-118599600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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