Variant report

Variant	rs9859319
Chromosome Location	chr3:118620829-118620830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs28392691	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58420381	1.00[AMR][1000 genomes]
rs6768020	1.00[AMR][1000 genomes]
rs6795721	0.82[ASW][hapmap]
rs6796798	1.00[ASW][hapmap];0.82[MKK][hapmap];1.00[AMR][1000 genomes]
rs72966899	1.00[AMR][1000 genomes]
rs72968606	1.00[AMR][1000 genomes]
rs72968612	1.00[AMR][1000 genomes]
rs72968632	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72968654	1.00[AMR][1000 genomes]
rs72970438	1.00[AMR][1000 genomes]
rs72970470	1.00[AMR][1000 genomes]
rs72970472	1.00[AMR][1000 genomes]
rs7623832	1.00[AMR][1000 genomes]
rs7624134	1.00[AMR][1000 genomes]
rs7625109	1.00[AMR][1000 genomes]
rs9289118	1.00[AMR][1000 genomes]
rs9814712	1.00[AMR][1000 genomes]
rs9826100	1.00[AMR][1000 genomes]
rs9827711	1.00[AMR][1000 genomes]
rs9835052	1.00[AMR][1000 genomes]
rs9840552	1.00[AMR][1000 genomes]
rs9841148	1.00[AMR][1000 genomes]
rs9847137	1.00[AMR][1000 genomes]
rs9848498	1.00[AMR][1000 genomes]
rs9854365	1.00[AMR][1000 genomes]
rs9857367	1.00[AMR][1000 genomes]
rs9862313	1.00[AMR][1000 genomes]
rs9862556	1.00[AMR][1000 genomes]
rs9873807	0.81[MKK][hapmap]
rs9876041	1.00[AMR][1000 genomes]
rs9882006	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118604000-118621400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:118604200-118621400	Weak transcription	Brain Angular Gyrus	brain
3	chr3:118604400-118621400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:118604400-118621400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:118608400-118621400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:118611600-118621000	Weak transcription	Ovary	ovary
7	chr3:118612200-118625600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:118613800-118621000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:118614200-118625000	Weak transcription	Aorta	Aorta
10	chr3:118618200-118623400	Strong transcription	Brain Hippocampus Middle	brain
11	chr3:118619000-118621000	Weak transcription	Brain Germinal Matrix	brain
12	chr3:118619200-118621400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:118619200-118623000	Weak transcription	Primary T cells from cord blood	blood
14	chr3:118619800-118624600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:118619800-118625000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:118620200-118621400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:118620200-118622000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:118620200-118625400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:118620200-118627200	Weak transcription	Fetal Brain Female	brain
21	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
22	chr3:118620400-118621400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:118620400-118622800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:118620400-118625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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