Variant report

Variant	rs10488642
Chromosome Location	chr7:138188932-138188933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138178116..138180071-chr7:138187810..138190378,3	K562	blood:
2	chr7:138185727..138188937-chr7:138189429..138192088,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10239358	0.92[CEU][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35668636	0.84[EUR][1000 genomes]
rs68115887	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7798391	0.90[YRI][hapmap]
rs7799136	0.82[EUR][1000 genomes]
rs7806963	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7810516	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831153	chr7:138078179-138265648	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138147200-138189000	Weak transcription	Thymus	Thymus
2	chr7:138157600-138191400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:138161800-138195800	Weak transcription	Fetal Brain Female	brain
4	chr7:138164000-138191400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:138164000-138199800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:138165000-138192000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:138168000-138196200	Weak transcription	Left Ventricle	heart
8	chr7:138169000-138190200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:138175200-138201200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:138176600-138190200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr7:138176600-138203600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr7:138177000-138189800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr7:138177000-138190200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:138177000-138212600	Weak transcription	Pancreas	Pancrea
15	chr7:138177600-138194600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:138178600-138189200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:138178600-138191400	Weak transcription	Right Atrium	heart
18	chr7:138178600-138212200	Weak transcription	NHLF	lung
19	chr7:138180200-138204200	Weak transcription	Brain Substantia Nigra	brain
20	chr7:138182200-138196200	Weak transcription	Spleen	Spleen
21	chr7:138183000-138196400	Weak transcription	Fetal Lung	lung
22	chr7:138183000-138203600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:138184400-138189000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:138184400-138189000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:138184400-138189000	Weak transcription	Fetal Thymus	thymus
26	chr7:138184400-138189000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr7:138184400-138190200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr7:138184400-138194600	Weak transcription	Gastric	stomach
29	chr7:138184400-138196200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr7:138184400-138196200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr7:138184400-138196400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:138184400-138196400	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:138184400-138197000	Weak transcription	Aorta	Aorta
34	chr7:138184400-138198600	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:138184600-138189200	Weak transcription	Fetal Intestine Large	intestine
36	chr7:138184600-138189200	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:138184600-138189200	Weak transcription	Fetal Stomach	stomach
38	chr7:138184600-138190000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:138184600-138190400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr7:138184600-138191400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr7:138184600-138191400	Weak transcription	Stomach Mucosa	stomach
42	chr7:138184600-138194600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr7:138184600-138196800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:138184800-138196200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr7:138184800-138204000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr7:138185000-138189600	Weak transcription	Primary T cells from cord blood	blood
47	chr7:138185000-138190000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:138185000-138191400	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:138185000-138194800	Weak transcription	GM12878-XiMat	blood
50	chr7:138185000-138198600	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links