Variant report

Variant	rs7799136
Chromosome Location	chr7:138276634-138276635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10239358	0.88[CEU][hapmap];0.80[YRI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10488642	0.81[CEU][hapmap];0.90[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.82[EUR][1000 genomes]
rs11761566	0.82[ASW][hapmap]
rs3213902	0.88[ASW][hapmap]
rs68115887	0.81[EUR][1000 genomes]
rs7806963	0.84[EUR][1000 genomes]
rs7811152	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7799136	ZC3HAV1L	cis	cerebellum	SCAN
rs7799136	SSBP1	cis	cerebellum	SCAN
rs7799136	TRIM24	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138265400-138276800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:138272400-138278200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr7:138272600-138280400	Weak transcription	Thymus	Thymus
4	chr7:138272600-138286200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:138272800-138278400	Weak transcription	Fetal Intestine Large	intestine
6	chr7:138273000-138278600	Weak transcription	Fetal Brain Female	brain
7	chr7:138273000-138284000	Weak transcription	Fetal Kidney	kidney
8	chr7:138273000-138285000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:138273400-138277000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:138276400-138277000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:138276600-138276800	Active TSS	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links