Variant report

Variant	rs10488845
Chromosome Location	chr4:55542869-55542870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55412343..55414208-chr4:55542565..55544089,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10461353	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10461354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10488844	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946333	1.00[MEX][hapmap]
rs2237024	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796767	0.86[CHB][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes]
rs3796768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55958262	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57500613	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834579	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73818375	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73818378	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73818380	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73818381	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55535000-55544800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:55537600-55554000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:55539200-55549800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:55539600-55545400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55540400-55543000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:55540400-55546200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:55541000-55543400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:55541400-55545600	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:55541400-55546000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:55541600-55543000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:55541600-55543200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:55541600-55543200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:55541800-55543000	Enhancers	Fetal Brain Male	brain
14	chr4:55541800-55543200	Enhancers	Fetal Intestine Large	intestine
15	chr4:55542000-55543000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr4:55542000-55543200	Enhancers	Fetal Intestine Small	intestine
17	chr4:55542000-55543400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr4:55542200-55543600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:55542200-55543600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:55542200-55545000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:55542600-55543800	Enhancers	K562	blood
22	chr4:55542600-55544000	Enhancers	Duodenum Mucosa	Duodenum
23	chr4:55542600-55545200	Weak transcription	Fetal Brain Female	brain
24	chr4:55542600-55550600	Weak transcription	Lung	lung
25	chr4:55542800-55543000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr4:55542800-55543000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:55542800-55543000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:55542800-55544000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:55542800-55544200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr4:55542800-55544800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:55542800-55545200	Weak transcription	H9 Cell Line	embryonic stem cell

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