Variant report

Variant	rs55958262
Chromosome Location	chr4:55542322-55542323
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10461353	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10461354	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10488844	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488845	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10488846	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237024	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796767	0.97[EUR][1000 genomes]
rs3796768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57500613	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834579	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73818375	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73818378	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs73818380	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73818381	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55535000-55544800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:55537600-55554000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:55539200-55549800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:55539600-55545400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:55540400-55543000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:55540400-55546200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:55541000-55542400	Enhancers	Brain Germinal Matrix	brain
8	chr4:55541000-55543400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:55541200-55542600	Enhancers	Fetal Brain Female	brain
10	chr4:55541400-55542800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:55541400-55545600	Enhancers	Primary hematopoietic stem cells	blood
12	chr4:55541400-55546000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr4:55541600-55542800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:55541600-55543000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:55541600-55543200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:55541600-55543200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:55541800-55542800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr4:55541800-55542800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:55541800-55543000	Enhancers	Fetal Brain Male	brain
20	chr4:55541800-55543200	Enhancers	Fetal Intestine Large	intestine
21	chr4:55542000-55542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:55542000-55542600	Enhancers	Lung	lung
23	chr4:55542000-55542800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr4:55542000-55542800	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr4:55542000-55543000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr4:55542000-55543200	Enhancers	Fetal Intestine Small	intestine
27	chr4:55542000-55543400	Enhancers	H1 Cell Line	embryonic stem cell
28	chr4:55542200-55543600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr4:55542200-55543600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:55542200-55545000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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