Variant report

Variant	rs10488913
Chromosome Location	chr4:106049416-106049417
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:105884034..105895590-chr4:106044778..106053207,47	MCF-7	breast:
2	chr4:105932463..105936165-chr4:106047602..106049768,3	MCF-7	breast:
3	chr4:105895866..105898402-chr4:106048724..106052300,3	MCF-7	breast:
4	chr4:106041526..106043206-chr4:106047664..106049788,2	MCF-7	breast:
5	chr4:105886561..105894585-chr4:106043962..106052941,18	MCF-7	breast:
6	chr2:3589183..3590705-chr4:106048435..106050294,2	MCF-7	breast:
7	chr4:105976784..105986292-chr4:106044571..106052702,25	MCF-7	breast:
8	chr4:106046108..106050165-chr4:106391446..106394724,4	MCF-7	breast:
9	chr4:106048208..106050465-chr4:106092982..106095215,2	MCF-7	breast:
10	chr4:105813669..105816273-chr4:106047766..106049998,5	MCF-7	breast:
11	chr4:105816661..105820025-chr4:106046680..106052012,4	MCF-7	breast:
12	chr4:105980136..105985353-chr4:106046016..106051646,9	MCF-7	breast:
13	chr4:106037748..106040803-chr4:106047611..106051482,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11097881	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11729069	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs17035289	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17035311	1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17616993	0.88[ASN][1000 genomes]
rs6843555	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106048200-106050400	Weak transcription	Fetal Heart	heart
2	chr4:106048600-106049600	Weak transcription	Fetal Lung	lung
3	chr4:106049400-106050200	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:106049400-106050400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:106049400-106053200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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