Variant report

Variant	rs17616993
Chromosome Location	chr4:106061385-106061386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000251906	Chromatin interaction
ENSG00000248242	Chromatin interaction
ENSG00000168769	Chromatin interaction
ENSG00000248373	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10488913	0.88[ASN][1000 genomes]
rs11097881	0.88[ASN][1000 genomes]
rs11729069	0.80[ASN][1000 genomes]
rs11933960	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12498609	0.84[EUR][1000 genomes]
rs12506006	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12511800	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12647779	0.88[EUR][1000 genomes]
rs12647884	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17035289	0.88[ASN][1000 genomes]
rs17035311	0.82[ASN][1000 genomes]
rs17583579	0.88[EUR][1000 genomes]
rs17583593	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2866774	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6533180	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6843555	0.87[ASN][1000 genomes]
rs949681	0.84[EUR][1000 genomes]
rs9637601	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106058400-106061800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr4:106059200-106064200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:106059400-106065600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:106059800-106061600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:106059800-106062000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:106060400-106062800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr4:106060800-106062400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:106060800-106062400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:106060800-106062600	Enhancers	GM12878-XiMat	blood
10	chr4:106061000-106062000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:106061000-106062000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:106061000-106062200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:106061200-106061600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:106061200-106061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:106061200-106062400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:106061200-106062400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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