Variant report

Variant	rs10489211
Chromosome Location	chr1:168313072-168313073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:168300197..168302893-chr1:168310234..168313350,3	K562	blood:
2	chr1:168312661..168313699-chr1:168334688..168335805,3	K562	blood:
3	chr1:168311615..168313900-chr1:168348090..168350975,2	MCF-7	breast:
4	chr1:168300197..168303468-chr1:168311046..168313350,3	K562	blood:
5	chr1:168312525..168314328-chr1:168315876..168317472,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12081788	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12239418	1.00[ASN][1000 genomes]
rs12726920	1.00[ASN][1000 genomes]
rs12735057	1.00[ASN][1000 genomes]
rs2076061	0.81[LWK][hapmap]
rs34601587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35100235	1.00[ASN][1000 genomes]
rs35620917	1.00[ASN][1000 genomes]
rs36059711	1.00[ASN][1000 genomes]
rs6697708	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71632357	1.00[ASN][1000 genomes]
rs7550761	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168311200-168313200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:168311600-168313800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr1:168311600-168314200	Enhancers	Colon Smooth Muscle	Colon
4	chr1:168311800-168313400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:168311800-168313600	Enhancers	Fetal Brain Female	brain
6	chr1:168311800-168314200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:168312000-168313600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:168312000-168313600	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr1:168312000-168313800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:168312000-168317200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:168312000-168317600	Weak transcription	Psoas Muscle	Psoas
12	chr1:168312000-168317800	Weak transcription	Left Ventricle	heart
13	chr1:168312200-168318000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr1:168312200-168318200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:168312200-168318200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:168312400-168313200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr1:168312400-168313200	Enhancers	Brain Anterior Caudate	brain
18	chr1:168312400-168313200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr1:168312400-168313200	Enhancers	Brain Substantia Nigra	brain
20	chr1:168312400-168313400	Enhancers	Brain Angular Gyrus	brain
21	chr1:168312400-168314000	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:168312400-168314200	Enhancers	Liver	Liver
23	chr1:168312400-168314400	Enhancers	Fetal Brain Male	brain
24	chr1:168312400-168317200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:168312400-168317200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr1:168312400-168317400	Weak transcription	Primary B cells from cord blood	blood
27	chr1:168312400-168318200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr1:168312600-168313200	Enhancers	HepG2	liver
29	chr1:168312600-168317200	Weak transcription	Primary T cells from cord blood	blood
30	chr1:168312600-168317400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr1:168312600-168317400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:168312800-168317000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr1:168312800-168317000	Weak transcription	Dnd41	blood
34	chr1:168312800-168317200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr1:168312800-168317200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr1:168312800-168317200	Weak transcription	K562	blood
37	chr1:168312800-168317800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr1:168313000-168313400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:168313000-168313600	Enhancers	Aorta	Aorta
40	chr1:168313000-168315200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr1:168313000-168317000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr1:168313000-168317200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr1:168313000-168317200	Weak transcription	Ovary	ovary
44	chr1:168313000-168318200	Weak transcription	Spleen	Spleen

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