Variant report

Variant	rs6697708
Chromosome Location	chr1:168311842-168311843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:168300197..168302893-chr1:168310234..168313350,3	K562	blood:
2	chr1:168311642..168312682-chr1:168331951..168332907,6	K562	blood:
3	chr1:168311615..168313900-chr1:168348090..168350975,2	MCF-7	breast:
4	chr1:168303642..168305967-chr1:168309670..168312067,2	K562	blood:
5	chr1:168311666..168312512-chr1:168334779..168335573,2	MCF-7	breast:
6	chr1:168300197..168303468-chr1:168311046..168313350,3	K562	blood:
7	chr1:168311676..168312490-chr1:168334705..168335594,4	MCF-7	breast:
8	chr1:168311820..168313033-chr1:168408760..168409687,3	K562	blood:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10489211	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12081788	0.81[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12239418	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726920	1.00[ASN][1000 genomes]
rs12735057	1.00[ASN][1000 genomes]
rs34601587	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35100235	1.00[ASN][1000 genomes]
rs35620917	1.00[ASN][1000 genomes]
rs36059711	1.00[ASN][1000 genomes]
rs71632357	1.00[ASN][1000 genomes]
rs7550761	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831825	chr1:168179175-168353062	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002007	chr1:168179463-168375973	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168283800-168312800	Weak transcription	Spleen	Spleen
2	chr1:168310000-168312800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:168310200-168312400	Enhancers	HMEC	breast
4	chr1:168310600-168312600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:168310600-168313000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:168310600-168313000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr1:168310800-168312000	Enhancers	Rectal Smooth Muscle	rectum
8	chr1:168310800-168312000	Enhancers	NHEK	skin
9	chr1:168310800-168312400	Enhancers	NH-A	brain
10	chr1:168310800-168312800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:168311200-168313200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:168311400-168312000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:168311400-168312400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr1:168311400-168312400	Enhancers	NHDF-Ad	bronchial
15	chr1:168311600-168312000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:168311600-168312000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr1:168311600-168312000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr1:168311600-168312000	Flanking Active TSS	A549	lung
19	chr1:168311600-168312000	Flanking Active TSS	Osteobl	bone
20	chr1:168311600-168312200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr1:168311600-168312200	Active TSS	Stomach Smooth Muscle	stomach
22	chr1:168311600-168312400	Active TSS	Brain Anterior Caudate	brain
23	chr1:168311600-168312400	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr1:168311600-168312600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr1:168311600-168312800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr1:168311600-168312800	Enhancers	K562	blood
27	chr1:168311600-168313000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr1:168311600-168313000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr1:168311600-168313000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr1:168311600-168313800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr1:168311600-168314200	Enhancers	Colon Smooth Muscle	Colon
32	chr1:168311800-168312000	Active TSS	H1 Cell Line	embryonic stem cell
33	chr1:168311800-168312000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:168311800-168312000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:168311800-168312000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr1:168311800-168312000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:168311800-168312000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr1:168311800-168312000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr1:168311800-168312000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:168311800-168312000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
41	chr1:168311800-168312000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:168311800-168312000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:168311800-168312000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:168311800-168312000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:168311800-168312000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr1:168311800-168312000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr1:168311800-168312000	Enhancers	Aorta	Aorta
48	chr1:168311800-168312000	Flanking Active TSS	Liver	Liver
49	chr1:168311800-168312000	Flanking Active TSS	Brain Cingulate Gyrus	brain
50	chr1:168311800-168312000	Flanking Active TSS	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links