Variant report

Variant	rs10489294
Chromosome Location	chr1:172186321-172186322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10489298	0.83[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap]
rs10911315	0.83[CEU][hapmap]
rs16843944	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs16844090	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16844095	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1746427	0.91[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap]
rs515060	0.83[CEU][hapmap];0.83[CHB][hapmap];0.81[CHD][hapmap]
rs552191	0.83[CEU][hapmap];0.84[CHB][hapmap]
rs610587	0.83[CEU][hapmap]
rs633995	0.80[JPT][hapmap]
rs6692434	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698237	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74124004	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs912300	0.83[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv872546	chr1:172186321-172219995	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172176600-172189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172186200-172186800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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