Variant report
| Variant | rs16844095 |
|---|---|
| Chromosome Location | chr1:172184659-172184660 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10489294 | 0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs16844090 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1746427 | 0.82[AMR][1000 genomes] |
| rs491767 | 0.87[AMR][1000 genomes] |
| rs499106 | 0.82[AMR][1000 genomes] |
| rs510473 | 0.87[AMR][1000 genomes] |
| rs511520 | 0.82[AMR][1000 genomes] |
| rs515060 | 0.82[AMR][1000 genomes] |
| rs535441 | 0.82[AMR][1000 genomes] |
| rs552191 | 0.82[AMR][1000 genomes] |
| rs570742 | 0.87[AMR][1000 genomes] |
| rs598577 | 0.87[AMR][1000 genomes] |
| rs608156 | 0.82[AMR][1000 genomes] |
| rs610082 | 0.87[AMR][1000 genomes] |
| rs610587 | 0.80[AMR][1000 genomes] |
| rs624538 | 0.87[AMR][1000 genomes] |
| rs629762 | 0.82[AMR][1000 genomes] |
| rs6692434 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6698237 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6698253 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs682215 | 0.87[AMR][1000 genomes] |
| rs74124004 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9425503 | 0.87[AMR][1000 genomes] |
| rs9425504 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000079 | chr1:172146935-172230545 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv465650 | chr1:172175115-172247127 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv548192 | chr1:172175115-172247127 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:172176600-172189800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
