Variant report

Variant	rs624538
Chromosome Location	chr1:172181162-172181163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10489298	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12125882	0.93[ASN][1000 genomes]
rs16843944	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843959	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16843972	1.00[ASN][1000 genomes]
rs16844090	0.81[AMR][1000 genomes]
rs16844095	0.87[AMR][1000 genomes]
rs1746427	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746428	0.93[ASN][1000 genomes]
rs2209097	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761189	0.92[ASN][1000 genomes]
rs2819529	0.92[ASN][1000 genomes]
rs473629	0.93[ASN][1000 genomes]
rs479960	0.92[ASN][1000 genomes]
rs480988	0.92[ASN][1000 genomes]
rs490006	0.85[ASN][1000 genomes]
rs491767	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499106	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs510473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511520	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs514864	0.83[ASN][1000 genomes]
rs515060	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs535441	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs537444	0.93[ASN][1000 genomes]
rs546751	0.92[ASN][1000 genomes]
rs552191	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs552399	0.93[ASN][1000 genomes]
rs554019	0.93[ASN][1000 genomes]
rs555798	0.93[ASN][1000 genomes]
rs567168	0.92[ASN][1000 genomes]
rs570742	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs572802	0.91[ASN][1000 genomes]
rs579989	0.93[ASN][1000 genomes]
rs583578	0.93[ASN][1000 genomes]
rs586745	0.91[ASN][1000 genomes]
rs589245	0.93[ASN][1000 genomes]
rs590567	0.92[ASN][1000 genomes]
rs598577	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60183508	0.82[ASN][1000 genomes]
rs608156	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs610082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610587	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615091	0.92[ASN][1000 genomes]
rs61633880	1.00[ASN][1000 genomes]
rs629316	0.93[ASN][1000 genomes]
rs629762	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs631915	0.89[ASN][1000 genomes]
rs640159	0.93[ASN][1000 genomes]
rs651032	0.92[ASN][1000 genomes]
rs6692434	0.90[AMR][1000 genomes]
rs6698237	0.90[AMR][1000 genomes]
rs6698253	0.84[AMR][1000 genomes]
rs676081	0.93[ASN][1000 genomes]
rs676215	0.93[ASN][1000 genomes]
rs676597	0.91[ASN][1000 genomes]
rs682215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs683128	0.93[ASN][1000 genomes]
rs688451	0.93[ASN][1000 genomes]
rs74124004	0.81[AMR][1000 genomes]
rs9425500	0.89[ASN][1000 genomes]
rs9425503	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425504	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425505	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172176600-172189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172178200-172181400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:172180000-172181400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:172180400-172181400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:172180600-172181400	Enhancers	Fetal Stomach	stomach
6	chr1:172180600-172182600	Active TSS	Fetal Muscle Leg	muscle

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