Variant report

Variant	rs61633880
Chromosome Location	chr1:172169673-172169674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10489298	0.99[ASN][1000 genomes]
rs12125882	0.93[ASN][1000 genomes]
rs16843944	1.00[ASN][1000 genomes]
rs16843959	0.98[ASN][1000 genomes]
rs16843972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1746427	1.00[ASN][1000 genomes]
rs1746428	0.93[ASN][1000 genomes]
rs2209097	1.00[ASN][1000 genomes]
rs2761189	0.92[ASN][1000 genomes]
rs2819529	0.92[ASN][1000 genomes]
rs473629	0.93[ASN][1000 genomes]
rs479960	0.92[ASN][1000 genomes]
rs480988	0.92[ASN][1000 genomes]
rs490006	0.85[ASN][1000 genomes]
rs491767	1.00[ASN][1000 genomes]
rs499106	0.99[ASN][1000 genomes]
rs510473	1.00[ASN][1000 genomes]
rs511520	0.97[ASN][1000 genomes]
rs514864	0.83[ASN][1000 genomes]
rs515060	0.99[ASN][1000 genomes]
rs535441	0.99[ASN][1000 genomes]
rs537444	0.93[ASN][1000 genomes]
rs546751	0.92[ASN][1000 genomes]
rs552191	0.99[ASN][1000 genomes]
rs552399	0.93[ASN][1000 genomes]
rs554019	0.93[ASN][1000 genomes]
rs555798	0.93[ASN][1000 genomes]
rs567168	0.92[ASN][1000 genomes]
rs570742	1.00[ASN][1000 genomes]
rs572802	0.91[ASN][1000 genomes]
rs579989	0.93[ASN][1000 genomes]
rs583578	0.93[ASN][1000 genomes]
rs586745	0.91[ASN][1000 genomes]
rs589245	0.93[ASN][1000 genomes]
rs590567	0.92[ASN][1000 genomes]
rs598577	0.91[ASN][1000 genomes]
rs60183508	0.82[ASN][1000 genomes]
rs608156	0.99[ASN][1000 genomes]
rs610082	1.00[ASN][1000 genomes]
rs610587	1.00[ASN][1000 genomes]
rs615091	0.92[ASN][1000 genomes]
rs624538	1.00[ASN][1000 genomes]
rs629316	0.93[ASN][1000 genomes]
rs629762	1.00[ASN][1000 genomes]
rs631915	0.89[ASN][1000 genomes]
rs640159	0.93[ASN][1000 genomes]
rs651032	0.92[ASN][1000 genomes]
rs676081	0.93[ASN][1000 genomes]
rs676215	0.93[ASN][1000 genomes]
rs676597	0.91[ASN][1000 genomes]
rs682215	1.00[ASN][1000 genomes]
rs683128	0.93[ASN][1000 genomes]
rs688451	0.93[ASN][1000 genomes]
rs9425500	0.89[ASN][1000 genomes]
rs9425503	1.00[ASN][1000 genomes]
rs9425504	1.00[ASN][1000 genomes]
rs9425505	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172168600-172172200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:172168800-172172000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:172169200-172176000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172169400-172174800	Weak transcription	Brain Cingulate Gyrus	brain

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