The 2.0 version of rSNPBase

Variant report

Variant rs479960
Chromosome Location chr1:172151672-172151673
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172146800-172152000 Enhancers Fetal Intestine Small intestine
2 chr1:172147400-172154000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:172148800-172152000 Enhancers Placenta Amnion Placenta Amnion
4 chr1:172149000-172152800 Enhancers Fetal Stomach stomach
5 chr1:172149400-172152000 Enhancers Fetal Heart heart
6 chr1:172149600-172153600 Weak transcription Small Intestine intestine
7 chr1:172149800-172151800 Enhancers Primary hematopoietic stem cells short term culture blood
8 chr1:172149800-172152000 Enhancers Primary monocytes fromperipheralblood blood
9 chr1:172150000-172154000 Weak transcription HUES64 Cell Line embryonic stem cell
10 chr1:172150000-172154200 Weak transcription Brain Angular Gyrus brain
11 chr1:172150200-172154400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr1:172150800-172151800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
13 chr1:172150800-172151800 Enhancers Brain Hippocampus Middle brain
14 chr1:172150800-172151800 Enhancers HSMM muscle
15 chr1:172150800-172152000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr1:172150800-172152000 Enhancers Colon Smooth Muscle Colon
17 chr1:172150800-172152000 Enhancers Fetal Adrenal Gland Adrenal Gland
18 chr1:172150800-172152000 Enhancers Rectal Smooth Muscle rectum
19 chr1:172150800-172152200 Enhancers Primary hematopoietic stem cells blood
20 chr1:172150800-172152800 Weak transcription Ovary ovary
21 chr1:172150800-172153600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr1:172150800-172154000 Weak transcription Brain Anterior Caudate brain
23 chr1:172150800-172155600 Enhancers Fetal Lung lung
24 chr1:172150800-172159000 Enhancers Primary B cells from peripheral blood blood
25 chr1:172151000-172151800 Enhancers Primary Natural Killer cells fromperipheralblood blood
26 chr1:172151000-172151800 Enhancers Stomach Mucosa stomach
27 chr1:172151000-172151800 Flanking Active TSS GM12878-XiMat blood
28 chr1:172151000-172152000 Enhancers Primary T cells fromperipheralblood blood
29 chr1:172151000-172152000 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr1:172151000-172152000 Enhancers Primary T helper naive cells fromperipheralblood blood
31 chr1:172151000-172152000 Enhancers Primary T helper 17 cells PMA-I stimulated --
32 chr1:172151000-172152000 Enhancers Primary T killer naive cells fromperipheralblood blood
33 chr1:172151000-172152000 Enhancers Osteobl bone
34 chr1:172151000-172152200 Enhancers Primary B cells from cord blood blood
35 chr1:172151000-172152200 Enhancers Primary T helper cells fromperipheralblood blood
36 chr1:172151000-172152400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
37 chr1:172151000-172152400 Enhancers Primary T killer memory cells from peripheral blood blood
38 chr1:172151000-172152400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr1:172151000-172152400 Enhancers Duodenum Mucosa Duodenum
40 chr1:172151000-172152800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr1:172151000-172153600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
42 chr1:172151000-172153800 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr1:172151000-172154000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
44 chr1:172151000-172154400 Weak transcription Stomach Smooth Muscle stomach
45 chr1:172151000-172160800 Weak transcription Brain Cingulate Gyrus brain
46 chr1:172151200-172151800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:172151200-172151800 Enhancers Muscle Satellite Cultured Cells --
48 chr1:172151200-172151800 Enhancers NHLF lung
49 chr1:172151200-172152000 Enhancers Fetal Kidney kidney
50 chr1:172151200-172152000 Enhancers NHDF-Ad bronchial

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Last update: Aug 31, 2015