Variant report

Variant	rs672740
Chromosome Location	chr1:172137119-172137120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10911299	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs479960	0.95[MEX][hapmap]
rs484686	0.92[CEU][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs492746	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs495590	0.81[CEU][hapmap]
rs508742	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs532688	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.89[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs555798	0.80[CEU][hapmap]
rs579989	0.80[CEU][hapmap]
rs583578	0.95[MEX][hapmap]
rs589209	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs598562	0.86[JPT][hapmap];0.95[MEX][hapmap]
rs633592	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs655853	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6689455	0.96[CEU][hapmap];0.87[GIH][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs681398	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs683128	0.90[MEX][hapmap]
rs687041	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:172125200-172137800	Weak transcription	Fetal Kidney	kidney
3	chr1:172125600-172137400	Weak transcription	NHLF	lung
4	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
5	chr1:172131000-172137800	Weak transcription	Fetal Stomach	stomach
6	chr1:172132600-172137400	Weak transcription	Right Ventricle	heart
7	chr1:172132800-172137200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:172132800-172137600	Weak transcription	Pancreas	Pancrea
9	chr1:172132800-172150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:172133000-172137200	Weak transcription	HSMM	muscle
11	chr1:172133000-172137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172133200-172137600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:172133400-172137600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:172133600-172137200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:172134000-172137200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:172134000-172137400	Weak transcription	NH-A	brain
17	chr1:172134000-172137600	Weak transcription	Osteobl	bone
18	chr1:172134000-172139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:172134200-172137400	Weak transcription	Brain Germinal Matrix	brain
20	chr1:172134200-172137400	Weak transcription	Brain Substantia Nigra	brain
21	chr1:172134200-172137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr1:172134200-172137600	Weak transcription	Right Atrium	heart
23	chr1:172134800-172137200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr1:172134800-172137400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:172134800-172139400	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:172135200-172137400	Weak transcription	NHEK	skin
27	chr1:172136800-172137400	Enhancers	Dnd41	blood
28	chr1:172136800-172138200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:172136800-172138600	Enhancers	Brain Hippocampus Middle	brain
30	chr1:172136800-172140400	Enhancers	Fetal Heart	heart
31	chr1:172137000-172137200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:172137000-172137200	Enhancers	Brain Angular Gyrus	brain
33	chr1:172137000-172137400	Flanking Active TSS	A549	lung
34	chr1:172137000-172137800	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr1:172137000-172138000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:172137000-172138000	Active TSS	Duodenum Mucosa	Duodenum
37	chr1:172137000-172138200	Enhancers	HSMMtube	muscle
38	chr1:172137000-172138600	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr1:172137000-172138600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr1:172137000-172138800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr1:172137000-172138800	Enhancers	NHDF-Ad	bronchial
42	chr1:172137000-172139200	Enhancers	Brain Cingulate Gyrus	brain
43	chr1:172137000-172139600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr1:172137000-172139800	Enhancers	Fetal Lung	lung

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