The 2.0 version of rSNPBase

Variant report

Variant rs655853
Chromosome Location chr1:172135653-172135654
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172114400-172137000 Weak transcription Brain Angular Gyrus brain
2 chr1:172123400-172149200 Weak transcription Brain Anterior Caudate brain
3 chr1:172125200-172137800 Weak transcription Fetal Kidney kidney
4 chr1:172125600-172137400 Weak transcription NHLF lung
5 chr1:172128400-172149800 Weak transcription Aorta Aorta
6 chr1:172131000-172137800 Weak transcription Fetal Stomach stomach
7 chr1:172132600-172137400 Weak transcription Right Ventricle heart
8 chr1:172132800-172137200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:172132800-172137600 Weak transcription Pancreas Pancrea
10 chr1:172132800-172150000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:172133000-172137200 Weak transcription HSMM muscle
12 chr1:172133000-172137400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
13 chr1:172133200-172137000 Weak transcription Fetal Lung lung
14 chr1:172133200-172137600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr1:172133400-172137600 Weak transcription Muscle Satellite Cultured Cells --
16 chr1:172133600-172137200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:172133800-172137000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr1:172134000-172137000 Weak transcription Brain Cingulate Gyrus brain
19 chr1:172134000-172137200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:172134000-172137400 Weak transcription NH-A brain
21 chr1:172134000-172137600 Weak transcription Osteobl bone
22 chr1:172134000-172139200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr1:172134200-172136800 Weak transcription Brain Hippocampus Middle brain
24 chr1:172134200-172137000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr1:172134200-172137000 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr1:172134200-172137000 Weak transcription Brain Inferior Temporal Lobe brain
27 chr1:172134200-172137000 Weak transcription NHDF-Ad bronchial
28 chr1:172134200-172137400 Weak transcription Brain Germinal Matrix brain
29 chr1:172134200-172137400 Weak transcription Brain Substantia Nigra brain
30 chr1:172134200-172137600 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr1:172134200-172137600 Weak transcription Right Atrium heart
32 chr1:172134400-172136800 Weak transcription Fetal Heart heart
33 chr1:172134800-172136800 Weak transcription A549 lung
34 chr1:172134800-172137000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:172134800-172137200 Weak transcription Placenta Amnion Placenta Amnion
36 chr1:172134800-172137400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:172134800-172139400 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:172135200-172137400 Weak transcription NHEK skin

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Last update: Aug 31, 2015