Variant report

Variant	rs583578
Chromosome Location	chr1:172156886-172156887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10489297	0.80[MEX][hapmap]
rs10489298	0.92[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs10911275	0.83[YRI][hapmap]
rs12125882	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16843944	0.92[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs16843959	0.91[ASN][1000 genomes]
rs16843972	0.84[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1746427	0.92[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs1746428	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209097	0.93[ASN][1000 genomes]
rs2761189	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2819529	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs473629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs479960	0.88[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs480988	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs490006	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs491767	0.93[ASN][1000 genomes]
rs499106	0.92[ASN][1000 genomes]
rs508742	0.80[CEU][hapmap];0.81[MEX][hapmap]
rs510473	0.93[ASN][1000 genomes]
rs511520	0.90[ASN][1000 genomes]
rs514864	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs515060	0.92[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs532688	0.95[JPT][hapmap]
rs535441	0.92[ASN][1000 genomes]
rs537444	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546751	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs552191	0.92[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs552399	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs554019	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs555798	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs567168	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs570742	0.93[ASN][1000 genomes]
rs572802	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs579989	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs589245	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590567	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs593688	0.80[MEX][hapmap]
rs598562	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs598577	0.85[ASN][1000 genomes]
rs608156	0.92[ASN][1000 genomes]
rs610082	0.93[ASN][1000 genomes]
rs610587	0.85[CHB][hapmap];0.82[CHD][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs615091	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61633880	0.93[ASN][1000 genomes]
rs624538	0.93[ASN][1000 genomes]
rs629316	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629762	0.93[ASN][1000 genomes]
rs631915	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs633995	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs640159	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs651032	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs672740	0.95[MEX][hapmap]
rs676081	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676215	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs676597	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs682215	0.93[ASN][1000 genomes]
rs683128	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688451	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912299	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs9425500	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9425501	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9425503	0.93[ASN][1000 genomes]
rs9425504	0.93[ASN][1000 genomes]
rs9425505	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172150800-172159000	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:172151000-172160800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:172153200-172157800	Enhancers	Primary B cells from cord blood	blood
4	chr1:172154000-172161000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:172154800-172158200	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:172155400-172158400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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