The 2.0 version of rSNPBase

Variant report

Variant rs2819529
Chromosome Location chr1:172149226-172149227
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172128400-172149800 Weak transcription Aorta Aorta
2 chr1:172132800-172150000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
3 chr1:172138400-172149800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr1:172142200-172149600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
5 chr1:172145800-172150000 Weak transcription Psoas Muscle Psoas
6 chr1:172146400-172149600 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr1:172146600-172150200 Enhancers Stomach Mucosa stomach
8 chr1:172146800-172152000 Enhancers Fetal Intestine Small intestine
9 chr1:172147400-172154000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr1:172147600-172149600 Enhancers Small Intestine intestine
11 chr1:172147600-172151200 Enhancers Fetal Intestine Large intestine
12 chr1:172148000-172149400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
13 chr1:172148000-172149800 Enhancers Colon Smooth Muscle Colon
14 chr1:172148200-172149400 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr1:172148200-172149400 Weak transcription Fetal Heart heart
16 chr1:172148200-172149600 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:172148200-172149800 Enhancers Primary T helper cells PMA-I stimulated --
18 chr1:172148200-172149800 Enhancers Duodenum Mucosa Duodenum
19 chr1:172148400-172149400 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr1:172148800-172149400 Enhancers Ovary ovary
21 chr1:172148800-172149800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
22 chr1:172148800-172149800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
23 chr1:172148800-172152000 Enhancers Placenta Amnion Placenta Amnion
24 chr1:172149000-172149400 Enhancers Primary T helper cells fromperipheralblood blood
25 chr1:172149000-172149400 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr1:172149000-172149400 Flanking Active TSS Fetal Lung lung
27 chr1:172149000-172149600 Enhancers Primary B cells from cord blood blood
28 chr1:172149000-172149600 Enhancers Primary T helper naive cells from peripheral blood blood
29 chr1:172149000-172149800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:172149000-172149800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
31 chr1:172149000-172149800 Enhancers Fetal Kidney kidney
32 chr1:172149000-172149800 Enhancers Fetal Muscle Leg muscle
33 chr1:172149000-172149800 Enhancers Rectal Smooth Muscle rectum
34 chr1:172149000-172149800 Enhancers NHDF-Ad bronchial
35 chr1:172149000-172150000 Enhancers Primary T cells from cord blood blood
36 chr1:172149000-172150000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
37 chr1:172149000-172150000 Enhancers Brain Angular Gyrus brain
38 chr1:172149000-172150000 Enhancers Brain Cingulate Gyrus brain
39 chr1:172149000-172150000 Enhancers Brain Substantia Nigra brain
40 chr1:172149000-172150400 Enhancers Fetal Adrenal Gland Adrenal Gland
41 chr1:172149000-172152800 Enhancers Fetal Stomach stomach
42 chr1:172149200-172149400 Active TSS GM12878-XiMat blood
43 chr1:172149200-172150000 Enhancers Primary B cells from peripheral blood blood
44 chr1:172149200-172150000 Enhancers Primary T helper 17 cells PMA-I stimulated --
45 chr1:172149200-172150000 Enhancers Brain Anterior Caudate brain
46 chr1:172149200-172150200 Enhancers Brain Dorsolateral Prefrontal Cortex brain
47 chr1:172149200-172150600 Enhancers Brain Hippocampus Middle brain

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Last update: Aug 31, 2015