Variant report
| Variant | rs9425501 |
|---|---|
| Chromosome Location | chr1:172160266-172160267 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs12125882 | 0.86[AMR][1000 genomes] |
| rs1746428 | 0.89[AMR][1000 genomes] |
| rs2761189 | 0.88[AMR][1000 genomes] |
| rs2819529 | 0.88[AMR][1000 genomes] |
| rs473629 | 0.87[AMR][1000 genomes] |
| rs479960 | 0.86[AMR][1000 genomes] |
| rs480988 | 0.89[AMR][1000 genomes] |
| rs490006 | 0.82[AMR][1000 genomes] |
| rs514864 | 0.86[AMR][1000 genomes] |
| rs537444 | 0.87[AMR][1000 genomes] |
| rs546751 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs552399 | 0.88[AMR][1000 genomes] |
| rs554019 | 0.87[AMR][1000 genomes] |
| rs555798 | 0.87[AMR][1000 genomes] |
| rs567168 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs572802 | 0.89[AMR][1000 genomes] |
| rs579989 | 0.87[AMR][1000 genomes] |
| rs583578 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs586745 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs589245 | 0.88[AMR][1000 genomes] |
| rs590567 | 0.88[AMR][1000 genomes] |
| rs615091 | 0.87[AMR][1000 genomes] |
| rs629316 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs631915 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs640159 | 0.87[AMR][1000 genomes] |
| rs651032 | 0.88[AMR][1000 genomes] |
| rs676081 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs676215 | 0.88[AMR][1000 genomes] |
| rs676597 | 0.86[AMR][1000 genomes] |
| rs683128 | 0.88[AMR][1000 genomes] |
| rs688451 | 0.87[AMR][1000 genomes] |
| rs9425500 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9425505 | 0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1000079 | chr1:172146935-172230545 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:172151000-172160800 | Weak transcription | Brain Cingulate Gyrus | brain |
| 2 | chr1:172154000-172161000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
