The 2.0 version of rSNPBase

Variant report

Variant rs480988
Chromosome Location chr1:172151817-172151818
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172146800-172152000 Enhancers Fetal Intestine Small intestine
2 chr1:172147400-172154000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:172148800-172152000 Enhancers Placenta Amnion Placenta Amnion
4 chr1:172149000-172152800 Enhancers Fetal Stomach stomach
5 chr1:172149400-172152000 Enhancers Fetal Heart heart
6 chr1:172149600-172153600 Weak transcription Small Intestine intestine
7 chr1:172149800-172152000 Enhancers Primary monocytes fromperipheralblood blood
8 chr1:172150000-172154000 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr1:172150000-172154200 Weak transcription Brain Angular Gyrus brain
10 chr1:172150200-172154400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr1:172150800-172152000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr1:172150800-172152000 Enhancers Colon Smooth Muscle Colon
13 chr1:172150800-172152000 Enhancers Fetal Adrenal Gland Adrenal Gland
14 chr1:172150800-172152000 Enhancers Rectal Smooth Muscle rectum
15 chr1:172150800-172152200 Enhancers Primary hematopoietic stem cells blood
16 chr1:172150800-172152800 Weak transcription Ovary ovary
17 chr1:172150800-172153600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr1:172150800-172154000 Weak transcription Brain Anterior Caudate brain
19 chr1:172150800-172155600 Enhancers Fetal Lung lung
20 chr1:172150800-172159000 Enhancers Primary B cells from peripheral blood blood
21 chr1:172151000-172152000 Enhancers Primary T cells fromperipheralblood blood
22 chr1:172151000-172152000 Enhancers Primary T helper naive cells from peripheral blood blood
23 chr1:172151000-172152000 Enhancers Primary T helper naive cells fromperipheralblood blood
24 chr1:172151000-172152000 Enhancers Primary T helper 17 cells PMA-I stimulated --
25 chr1:172151000-172152000 Enhancers Primary T killer naive cells fromperipheralblood blood
26 chr1:172151000-172152000 Enhancers Osteobl bone
27 chr1:172151000-172152200 Enhancers Primary B cells from cord blood blood
28 chr1:172151000-172152200 Enhancers Primary T helper cells fromperipheralblood blood
29 chr1:172151000-172152400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
30 chr1:172151000-172152400 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr1:172151000-172152400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr1:172151000-172152400 Enhancers Duodenum Mucosa Duodenum
33 chr1:172151000-172152800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr1:172151000-172153600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr1:172151000-172153800 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr1:172151000-172154000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr1:172151000-172154400 Weak transcription Stomach Smooth Muscle stomach
38 chr1:172151000-172160800 Weak transcription Brain Cingulate Gyrus brain
39 chr1:172151200-172152000 Enhancers Fetal Kidney kidney
40 chr1:172151200-172152000 Enhancers NHDF-Ad bronchial
41 chr1:172151200-172152200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
42 chr1:172151200-172154200 Weak transcription Fetal Intestine Large intestine
43 chr1:172151400-172152000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr1:172151400-172152000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr1:172151400-172152000 Enhancers Rectal Mucosa Donor 29 rectum
46 chr1:172151400-172152000 Enhancers Monocytes-CD14+_RO01746 blood
47 chr1:172151400-172152200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:172151400-172153600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
49 chr1:172151600-172152000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:172151600-172152000 Enhancers Fetal Muscle Leg muscle

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Last update: Aug 31, 2015