Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172182635..172185349-chr1:172186407..172188943,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10911315	0.81[CHB][hapmap]
rs12125882	0.85[CEU][hapmap]
rs1746428	0.81[EUR][1000 genomes]
rs2819529	0.80[EUR][1000 genomes]
rs473629	0.87[CEU][hapmap]
rs479960	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs480988	0.80[EUR][1000 genomes]
rs537444	0.87[CEU][hapmap]
rs546751	0.80[EUR][1000 genomes]
rs552399	0.81[EUR][1000 genomes]
rs555798	0.84[CEU][hapmap]
rs572802	0.81[EUR][1000 genomes]
rs579989	0.84[CEU][hapmap]
rs583578	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs586745	0.80[EUR][1000 genomes]
rs589245	0.81[EUR][1000 genomes]
rs590567	0.80[EUR][1000 genomes]
rs598562	0.91[CEU][hapmap]
rs629316	0.80[EUR][1000 genomes]
rs633995	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs651032	0.80[EUR][1000 genomes]
rs676081	0.81[EUR][1000 genomes]
rs683128	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs688451	0.82[EUR][1000 genomes]
rs912300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv465650	chr1:172175115-172247127	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv548192	chr1:172175115-172247127	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv872546	chr1:172186321-172219995	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172176600-172189800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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