The 2.0 version of rSNPBase

Variant report

Variant rs535441
Chromosome Location chr1:172150267-172150268
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172146800-172152000 Enhancers Fetal Intestine Small intestine
2 chr1:172147400-172154000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:172147600-172151200 Enhancers Fetal Intestine Large intestine
4 chr1:172148800-172152000 Enhancers Placenta Amnion Placenta Amnion
5 chr1:172149000-172150400 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr1:172149000-172152800 Enhancers Fetal Stomach stomach
7 chr1:172149200-172150600 Enhancers Brain Hippocampus Middle brain
8 chr1:172149400-172150400 Enhancers Primary hematopoietic stem cells blood
9 chr1:172149400-172150600 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
10 chr1:172149400-172151000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
11 chr1:172149400-172151000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
12 chr1:172149400-172151600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
13 chr1:172149400-172152000 Enhancers Fetal Heart heart
14 chr1:172149600-172150800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
15 chr1:172149600-172151400 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr1:172149600-172153600 Weak transcription Small Intestine intestine
17 chr1:172149800-172150400 Flanking Active TSS Adipose Nuclei Adipose
18 chr1:172149800-172150400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:172149800-172150600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
20 chr1:172149800-172150600 Flanking Active TSS Fetal Kidney kidney
21 chr1:172149800-172151000 Enhancers HUES48 Cell Line embryonic stem cell
22 chr1:172149800-172151000 Active TSS Primary T cells fromperipheralblood blood
23 chr1:172149800-172151000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr1:172149800-172151000 Active TSS Aorta Aorta
25 chr1:172149800-172151000 Flanking Active TSS Osteobl bone
26 chr1:172149800-172151200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:172149800-172151200 Active TSS Rectal Mucosa Donor 29 rectum
28 chr1:172149800-172151400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:172149800-172151600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:172149800-172151800 Enhancers Primary hematopoietic stem cells short term culture blood
31 chr1:172149800-172152000 Enhancers Primary monocytes fromperipheralblood blood
32 chr1:172150000-172150400 Active TSS Primary B cells from cord blood blood
33 chr1:172150000-172150400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
34 chr1:172150000-172150400 Flanking Active TSS Brain Anterior Caudate brain
35 chr1:172150000-172150400 Enhancers Skeletal Muscle Female skeletal muscle
36 chr1:172150000-172150600 Flanking Active TSS Primary T cells from cord blood blood
37 chr1:172150000-172150600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr1:172150000-172150600 Active TSS Brain Substantia Nigra brain
39 chr1:172150000-172150600 Active TSS Skeletal Muscle Male skeletal muscle
40 chr1:172150000-172150600 Active TSS GM12878-XiMat blood
41 chr1:172150000-172150600 Enhancers HSMMtube muscle
42 chr1:172150000-172150800 Flanking Active TSS Primary B cells from peripheral blood blood
43 chr1:172150000-172150800 Active TSS Primary mononuclear cells fromperipheralblood Blood
44 chr1:172150000-172150800 Active TSS Brain Cingulate Gyrus brain
45 chr1:172150000-172150800 Active TSS Brain Inferior Temporal Lobe brain
46 chr1:172150000-172150800 Active TSS Pancreatic Islets Pancreatic Islet
47 chr1:172150000-172150800 Flanking Active TSS Fetal Lung lung
48 chr1:172150000-172150800 Active TSS Fetal Muscle Trunk muscle
49 chr1:172150000-172150800 Active TSS Psoas Muscle Psoas
50 chr1:172150000-172150800 Flanking Active TSS HSMM muscle

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Last update: Aug 31, 2015