Variant report

Variant	rs10911275
Chromosome Location	chr1:172172776-172172777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172153958..172156265-chr1:172172390..172174263,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489296	1.00[CEU][hapmap];0.84[CHB][hapmap];0.98[EUR][1000 genomes]
rs10752861	0.82[CEU][hapmap]
rs10911278	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11800007	0.93[EUR][1000 genomes]
rs11800549	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs11800998	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs11801252	0.98[EUR][1000 genomes]
rs11804505	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807738	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810189	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12090953	0.82[CEU][hapmap]
rs12240040	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277134	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs17277295	1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17362060	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2761184	0.82[CEU][hapmap]
rs2761186	0.82[CEU][hapmap]
rs2819531	0.82[CEU][hapmap]
rs28378748	0.82[CEU][hapmap]
rs4244191	0.82[CEU][hapmap]
rs4641331	0.82[CEU][hapmap]
rs4644529	0.96[EUR][1000 genomes]
rs4916242	0.82[CEU][hapmap]
rs583578	0.83[YRI][hapmap]
rs6425637	0.82[CEU][hapmap]
rs6425638	0.82[CEU][hapmap]
rs6665598	0.82[CEU][hapmap]
rs6690462	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787394	1.00[CEU][hapmap];0.84[CHB][hapmap];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172169200-172176000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172169400-172174800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:172171200-172174200	Weak transcription	Fetal Brain Female	brain
4	chr1:172172000-172172800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:172172000-172173200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:172172200-172172800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr1:172172200-172172800	Enhancers	NHLF	lung
8	chr1:172172200-172173000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:172172400-172172800	Flanking Active TSS	Osteobl	bone
10	chr1:172172600-172172800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr1:172172600-172173000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links