Variant report

Variant	rs11800549
Chromosome Location	chr1:172134682-172134683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172133515..172135721-chr1:172140408..172143277,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10489296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911275	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs10911278	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11800007	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11800998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801252	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11804505	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11805471	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11807738	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11810189	0.96[EUR][1000 genomes]
rs12240040	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17277134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17362060	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4644529	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6690462	0.96[EUR][1000 genomes]
rs9787394	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172114400-172137000	Weak transcription	Brain Angular Gyrus	brain
2	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
3	chr1:172125200-172137800	Weak transcription	Fetal Kidney	kidney
4	chr1:172125600-172137400	Weak transcription	NHLF	lung
5	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
6	chr1:172131000-172137800	Weak transcription	Fetal Stomach	stomach
7	chr1:172132200-172134800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr1:172132400-172134800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:172132600-172134800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:172132600-172137400	Weak transcription	Right Ventricle	heart
11	chr1:172132800-172137200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:172132800-172137600	Weak transcription	Pancreas	Pancrea
13	chr1:172132800-172150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr1:172133000-172137200	Weak transcription	HSMM	muscle
15	chr1:172133000-172137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:172133200-172137000	Weak transcription	Fetal Lung	lung
17	chr1:172133200-172137600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:172133400-172137600	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr1:172133600-172134800	Enhancers	A549	lung
20	chr1:172133600-172137200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:172133800-172134800	Enhancers	Left Ventricle	heart
22	chr1:172133800-172134800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:172133800-172137000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:172134000-172137000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr1:172134000-172137200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:172134000-172137400	Weak transcription	NH-A	brain
27	chr1:172134000-172137600	Weak transcription	Osteobl	bone
28	chr1:172134000-172139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr1:172134200-172136800	Weak transcription	Brain Hippocampus Middle	brain
30	chr1:172134200-172137000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:172134200-172137000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:172134200-172137000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr1:172134200-172137000	Weak transcription	NHDF-Ad	bronchial
34	chr1:172134200-172137400	Weak transcription	Brain Germinal Matrix	brain
35	chr1:172134200-172137400	Weak transcription	Brain Substantia Nigra	brain
36	chr1:172134200-172137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr1:172134200-172137600	Weak transcription	Right Atrium	heart
38	chr1:172134400-172136800	Weak transcription	Fetal Heart	heart
39	chr1:172134600-172134800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:172134600-172134800	Enhancers	Esophagus	oesophagus

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