Variant report

Variant	rs17277134
Chromosome Location	chr1:172137293-172137294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172137145..172139186-chr1:173835377..173837374,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234741	Chromatin interaction
ENSG00000185278	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10489296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911275	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes]
rs10911278	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11800007	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11800549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11800998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11801252	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11804505	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11805471	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11807738	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11810189	0.96[EUR][1000 genomes]
rs12240040	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17277295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17362060	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4644529	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6690462	0.96[EUR][1000 genomes]
rs9787394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172123400-172149200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:172125200-172137800	Weak transcription	Fetal Kidney	kidney
3	chr1:172125600-172137400	Weak transcription	NHLF	lung
4	chr1:172128400-172149800	Weak transcription	Aorta	Aorta
5	chr1:172131000-172137800	Weak transcription	Fetal Stomach	stomach
6	chr1:172132600-172137400	Weak transcription	Right Ventricle	heart
7	chr1:172132800-172137600	Weak transcription	Pancreas	Pancrea
8	chr1:172132800-172150000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr1:172133000-172137400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr1:172133200-172137600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:172133400-172137600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr1:172134000-172137400	Weak transcription	NH-A	brain
13	chr1:172134000-172137600	Weak transcription	Osteobl	bone
14	chr1:172134000-172139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:172134200-172137400	Weak transcription	Brain Germinal Matrix	brain
16	chr1:172134200-172137400	Weak transcription	Brain Substantia Nigra	brain
17	chr1:172134200-172137600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:172134200-172137600	Weak transcription	Right Atrium	heart
19	chr1:172134800-172137400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:172134800-172139400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:172135200-172137400	Weak transcription	NHEK	skin
22	chr1:172136800-172137400	Enhancers	Dnd41	blood
23	chr1:172136800-172138200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:172136800-172138600	Enhancers	Brain Hippocampus Middle	brain
25	chr1:172136800-172140400	Enhancers	Fetal Heart	heart
26	chr1:172137000-172137400	Flanking Active TSS	A549	lung
27	chr1:172137000-172137800	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr1:172137000-172138000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:172137000-172138000	Active TSS	Duodenum Mucosa	Duodenum
30	chr1:172137000-172138200	Enhancers	HSMMtube	muscle
31	chr1:172137000-172138600	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr1:172137000-172138600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr1:172137000-172138800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:172137000-172138800	Enhancers	NHDF-Ad	bronchial
35	chr1:172137000-172139200	Enhancers	Brain Cingulate Gyrus	brain
36	chr1:172137000-172139600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:172137000-172139800	Enhancers	Fetal Lung	lung
38	chr1:172137200-172137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:172137200-172137600	Weak transcription	Brain Angular Gyrus	brain
40	chr1:172137200-172137800	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr1:172137200-172138000	Enhancers	HSMM	muscle
42	chr1:172137200-172138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr1:172137200-172138400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:172137200-172138400	Enhancers	Placenta Amnion	Placenta Amnion
45	chr1:172137200-172138600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:172137200-172138600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:172137200-172138600	Enhancers	HMEC	breast

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