Variant report

Variant	rs10911278
Chromosome Location	chr1:172173076-172173077
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10489296	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10911275	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11800007	0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11800549	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11800998	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11801252	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11804505	1.00[EUR][1000 genomes]
rs11805471	1.00[EUR][1000 genomes]
rs11807738	1.00[EUR][1000 genomes]
rs11810189	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240040	1.00[EUR][1000 genomes]
rs17277134	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17277295	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17362060	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644529	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6690462	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9787394	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172169200-172176000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:172169400-172174800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:172171200-172174200	Weak transcription	Fetal Brain Female	brain
4	chr1:172172000-172173200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:172172800-172175200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:172172800-172175600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr1:172173000-172173800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:172173000-172174800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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