Variant report

Variant	rs11804505
Chromosome Location	chr1:172155688-172155689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10489296	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10911275	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10911278	1.00[EUR][1000 genomes]
rs11800007	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11800549	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11800998	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11801252	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11805471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11807738	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11810189	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12240040	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17277134	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17277295	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17362060	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4644529	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6690462	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9787394	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000079	chr1:172146935-172230545	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3331688	chr1:172155645-172155926	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172150800-172159000	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:172151000-172160800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:172152800-172156000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:172153200-172157800	Enhancers	Primary B cells from cord blood	blood
5	chr1:172153400-172155800	Enhancers	Fetal Stomach	stomach
6	chr1:172153800-172155800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:172153800-172156200	Enhancers	Fetal Kidney	kidney
8	chr1:172154000-172156000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr1:172154000-172161000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:172154800-172158200	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:172155000-172156000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:172155200-172156200	Weak transcription	Primary T cells from cord blood	blood
13	chr1:172155400-172158400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr1:172155600-172156200	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links