Variant report

Variant	rs10489552
Chromosome Location	chr1:70114584-70114585
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10157748	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11209506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036330	0.85[CHB][hapmap];0.92[YRI][hapmap]
rs12141191	0.82[ASN][1000 genomes]
rs1245055	0.84[JPT][hapmap]
rs1245060	0.84[JPT][hapmap]
rs1245062	0.87[CHB][hapmap]
rs1572984	0.94[CEU][hapmap];0.87[CHB][hapmap]
rs36080227	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61782242	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61782244	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6662257	0.94[CEU][hapmap];0.87[CHB][hapmap];0.96[EUR][1000 genomes]
rs723995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2764189	chr1:70111889-70137513	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70106200-70126000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:70112400-70117400	Weak transcription	Pancreas	Pancrea
3	chr1:70112400-70126000	Weak transcription	Brain Anterior Caudate	brain
4	chr1:70113000-70115800	Enhancers	Primary T cells from cord blood	blood
5	chr1:70113200-70115000	Weak transcription	Fetal Brain Female	brain
6	chr1:70114000-70114600	Enhancers	NHEK	skin
7	chr1:70114000-70115400	Enhancers	Fetal Brain Male	brain
8	chr1:70114200-70120800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:70114400-70114600	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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