Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10157748	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489552	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11209505	0.82[ASN][1000 genomes]
rs11209506	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1245055	0.84[ASN][1000 genomes]
rs1245059	0.83[ASN][1000 genomes]
rs1245060	0.83[ASN][1000 genomes]
rs1245062	0.84[ASN][1000 genomes]
rs1773349	0.84[ASN][1000 genomes]
rs2025598	0.82[ASN][1000 genomes]
rs2066296	0.82[ASN][1000 genomes]
rs2764536	0.82[ASN][1000 genomes]
rs2901340	0.82[ASN][1000 genomes]
rs36080227	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61782242	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6662257	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs699223	0.80[ASN][1000 genomes]
rs723995	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs800923	0.82[ASN][1000 genomes]
rs810347	0.82[ASN][1000 genomes]
rs810348	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949691	chr1:69749722-70302201	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3384194	chr1:69885024-70275430	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830126	chr1:70014879-70167979	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70106200-70126000	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search: