Variant report

Variant	rs10489744
Chromosome Location	chr1:165380623-165380624
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10918179	0.86[CEU][hapmap]
rs2134095	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767339	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10489744	TMCO1	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
2	chr1:165370400-165380800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
4	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:165377600-165381200	Enhancers	Fetal Heart	heart
6	chr1:165377800-165389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:165378000-165399600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:165378400-165391200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:165378600-165383800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr1:165379200-165385800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr1:165379400-165393800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr1:165379600-165381000	Enhancers	Left Ventricle	heart
13	chr1:165379600-165384200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr1:165379600-165389000	Weak transcription	Psoas Muscle	Psoas
15	chr1:165380200-165385200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr1:165380400-165394000	Weak transcription	Right Ventricle	heart
17	chr1:165380600-165381200	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:165380600-165384400	Weak transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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