Variant report

Variant	rs2134095
Chromosome Location	chr1:165377552-165377553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10489744	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10918179	0.86[CEU][hapmap]
rs3767339	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2134095	TMCO1	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165362600-165378200	Weak transcription	Psoas Muscle	Psoas
2	chr1:165362800-165392200	Weak transcription	Brain Anterior Caudate	brain
3	chr1:165363600-165378400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:165367800-165378600	Weak transcription	Fetal Lung	lung
5	chr1:165370400-165380800	Strong transcription	Fetal Muscle Trunk	muscle
6	chr1:165373400-165380600	Strong transcription	Fetal Muscle Leg	muscle
7	chr1:165373600-165377600	Weak transcription	Lung	lung
8	chr1:165373600-165378000	Weak transcription	Right Ventricle	heart
9	chr1:165373600-165378400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:165373600-165392600	Weak transcription	Brain Substantia Nigra	brain
11	chr1:165373800-165378600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:165375600-165378000	Weak transcription	Right Atrium	heart
13	chr1:165376400-165377800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:165376400-165378400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:165376400-165393400	Weak transcription	Brain Hippocampus Middle	brain
16	chr1:165376800-165377600	Bivalent Enhancer	NHEK	skin
17	chr1:165377000-165377800	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links